Assoc. Prof.AYCAN GÜNDOĞDU


Tıp Fakültesi, Temel Tıp Bilimleri

Tıbbi Mikrobiyoloji


Research Areas: Health Sciences, Medicine, Fundamental Medical Sciences, Microbiology and Clinical Microbiology, Medical Microbiology, Basic Sciences, Life Sciences, Microbiology, Bacteriology


Names in Publications: Gundogdu Aycan

Metrics

Publication

113

Citation (WoS)

303

Citation (Scopus)

325

H-Index (WoS)

10

H-Index (Scopus)

10

Project

14

Thesis Advisory

6

Open Access

10
UN Sustainable Development Goals

Education Information

2008 - 2013

2008 - 2013

Doctorate

Australian National University, Faculty Of Health And Science, Australia

Research Areas

Health Sciences, Medicine, Fundamental Medical Sciences, Microbiology and Clinical Microbiology, Medical Microbiology, Basic Sciences, Life Sciences, Microbiology, Bacteriology

Academic Titles / Tasks

2019 - Continues

2019 - Continues

Associate Professor

Erciyes University, Tıp Fakültesi, Temel Tıp Bilimleri

2018 - 2019

2018 - 2019

Assistant Professor

Erciyes University, Tıp Fakültesi, Temel Bilimler

2014 - 2018

2014 - 2018

Assistant Professor

Erciyes University, Tıp Fakültesi, Temel Bilimler

Published journal articles indexed by SCI, SSCI, and AHCI

2020

2020

COVID-19 Pandemic: Group Testing

Nalbantoğlu Ö. U. , Gündoğdu A.

FRONTIERS IN MEDICINE, vol.7, 2020 (Peer-Reviewed Journal) Sustainable Development identifier identifier identifier

2019

2019

Presence of OXA-48 Gene in a Clinical Isolate of Lactobacillus rhamnosus

HAZIROLAN G., GÜNDOĞDU A., Nigiz S., ALTUN B., GÜR D.

FOODBORNE PATHOGENS AND DISEASE, vol.16, no.12, pp.840-843, 2019 (Peer-Reviewed Journal) identifier identifier identifier

2017

2017

Could Frequent Carbapenem Use Be a Risk Factor for Colistin Resistance?

GÜNDOĞDU A., Ulu-Kilic A., KILIÇ H., OZHAN E., ALTUN D., CAKIR O., et al.

MICROBIAL DRUG RESISTANCE, vol.24, no.6, pp.774-781, 2017 (Peer-Reviewed Journal) identifier identifier identifier

2015

2015

Antibiyotik Çağı Sonunda Keşfedilen Yeni Dünyalar: Rezistom ve Mobilom

GÜNDOĞDU A., ALP MEŞE E.

Flora İnfeksiyon Hastalıkları ve Klinik Mikrobiyoloji Dergisi, vol.20, no.4, pp.167-173, 2015 (Peer-Reviewed Journal)

2012

2012

Prevalence and pathogenesis of extended-spectrum beta-lactamase producing Escherichia coli causing urinary tract infection in hospitalized patients

Guendogdu A., LONG Y. B. , KATOULI M.

EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES, vol.31, no.11, pp.3107-3116, 2012 (Peer-Reviewed Journal) identifier identifier identifier

Articles Published in Other Journals

2019

2019

Rapid detection of difficult-to-culture bacterial pathogens using real-time nanopore sequencing

GÜNDOĞDU A., ULU KILIÇ A., KILIÇ H., NALBANTOĞLU Ö. U.

Infectious Diseases and Clinical Microbiology, vol.1, no.3, pp.128-133, 2019 (Peer-Reviewed Journal) Creative Commons License Sustainable Development

2019

2019

Mikrobiyom Modülasyonunda Kişiselleştirilmiş Probiyotik İhtiyacı

Gündoğdu A.

Tıp Fakültesi Klinikleri Dergisi, vol.2, no.3, pp.79-82, 2019 (Peer-Reviewed Journal) Creative Commons License

2018

2018

Bacteriophage Therapy: An Unforgetten Source of Cure

GÜNDOĞDU A., ULU KILIÇ A.

KLIMIK JOURNAL, vol.31, no.2, pp.78-87, 2018 (Peer-Reviewed Journal) Creative Commons License Sustainable Development identifier identifier

2016

2016

Bir Süper Organizma Olarak İnsan; Mikrobiyomun Genetik Kontrolü

GÜNDOĞDU A.

TÜRK MİKROBİYOLOJİ CEMİYETİ DERGİSİ, vol.46, no.4, pp.147-151, 2016 (Peer-Reviewed Journal)

2016

2016

Human Being as a “Superorganism” Genetic Control of Microbiome

GÜNDOĞDU A.

Türk Mikrobiyoloji Cemiyeti Dergisi, vol.46, no.4, pp.147-151, 2016 (Peer-Reviewed Journal)

Refereed Congress / Symposium Publications in Proceedings

2019

2019

Mikrobiyom Çalışmalarında Laboratuvar Süreçleri ve Translasyonel Yaklaşımlar

GÜNDOĞDU A.

7. Pediatrik Probiyotik Prebiyotik Akademisi, Antalya, Turkey, 21 - 24 February 2019, pp.25-27

2018

2018

The taxonomic origins of the antimicrobial resistance genes present in hot-spot environments.

HORA M., GÜNDOĞDU A., KILIÇ H.

38. Türk mikrobiyoloji cemiyeti kongresi, Antalya, Turkey, 4 - 08 November 2018, pp.21

2018

2018

Antimicrobial resistance, genomic and molecular epidemiologic analysis of Salmonella serovars in Hacettepe University Hospitals

Ünalan T., Demirci S., Eser Ö., GÜNDOĞDU A., Çakar A., Güleşen R., et al.

ESCMID/ASM Conference on Drug Development to Meet the Challenge of Antimicrobial Resistance, Lizbon, Portugal, 4 - 07 September 2018, pp.34

2018

2018

Potential microbial biomarkers of lung cancer

GÜNDOĞDU A., ÖNAL Ö., DEMİR Ö. F. , ÖNAL M. G. , NALBANTOĞLU Ö. U.

28th European Congress of Clinical Microbiology and Infectious Diseases, 21 - 24 April 2018 Sustainable Development

2018

2018

Resistome

GÜNDOĞDU A.

2nd International Human Microbiota: In health and diseases congress, Antalya, Turkey, 12 - 22 April 2018, pp.2

2018

2018

Microbiome Network Analysis Reveals Highly Symbiotic Interaction of Core Metabolic Pathways

Taylan B., GÜNDOĞDU A., NALBANTOĞLU Ö. U.

2nd International Human Microbiota: In health and diseases congress, Antalya, Turkey, 18 - 22 April 2018, pp.95

2018

2018

Towards Microbiome-Based Liquid Biopsy: Oral Microbiota Harbors Highly Accurate Biomarkers of Lung Cancer

GÜNDOĞDU A., NALBANTOĞLU Ö. U. , ÖNAL Ö., Önal M. G.

2nd International Human Microbiota: In health and diseases congress, Antalya, Turkey, 18 - 22 April 2018, pp.60-61 Sustainable Development

2018

2018

Should Bacterial Etiologies Be Considered in Aseptic Loosening?

GÜNDOĞDU A., NALBANTOĞLU Ö. U. , ULU KILIÇ A., KAFADAR I. H. , GÜNEY A., KILIÇ H.

2nd International Human Microbiota: In health and diseases congress, Antalya, Turkey, 18 - 22 April 2018, pp.71

2018

2018

Turkish Microbes: Previously Non-Catalogued Genes Were Detected in the Gut Metagenomes of Turkish Individuals

Hora M., Yalçın K., GÜNDOĞDU A.

2nd International Human Microbiota: In health and diseases congress, Antalya, Turkey, 18 - 22 April 2018, pp.59

2018

2018

Accurate Classification and Biomarker Discovery in Disease Microbiome Using a Novel De Novo Bioinformatics Approach

NALBANTOĞLU Ö. U. , Yalçın K., GÜNDOĞDU A.

2nd International Human Microbiota: In health and diseases congress, Antalya, Turkey, 18 - 22 April 2018, pp.63

2018

2018

Persistence of Microbial Communities in the Hospital Environment

Aslan-Gürpınar E., NALBANTOĞLU Ö. U. , KILIÇ H., ULU KILIÇ A., GÜNDOĞAN K., GÜNDOĞDU A.

2nd International Human Microbiota: In health and diseases congress, Antalya, Turkey, 18 - 22 April 2018, pp.44

2018

2018

Biomarkers of Diseases in Human Microbiome-Practice

GÜNDOĞDU A.

The 2nd International Congress on Human Microbiota and Health Effects, Antalya, Turkey, 18 - 22 April 2018, pp.37 Sustainable Development

2018

2018

Comparison of antimicrobial resistance-gene diversity in gut microbiome of healthy individuals from Turkey, Europe, America and China

GÜNDOĞDU A., Yalçın K., ULU KILIÇ A., Saka S., NALBANTOĞLU Ö. U.

28th European Congress of Clinical Microbiology and Infectious Diseases8th European Congress of Clinical Microbiology and Infectious Diseases, Madrid, Spain, 21 April 2018, pp.1512

2018

2018

Whole-genome sequencing reveals recently acquired virulence islands in Ralstonia mannitolilytica isolated from high-risk patients

NALBANTOĞLU Ö. U. , KILIÇ H., ULU KILIÇ A., Hora M., GÜNDOĞDU A.

28th European Congress of Clinical Microbiology and Infectious Diseases8th European Congress of Clinical Microbiology and Infectious Diseases, Madrid, Spain, 21 April 2018, pp.1765

2018

2018

İnsan ve Çevre Mikrobiyomunda Rezistom-Mobilom Döngüleri

GÜNDOĞDU A.

13. Antimikrobik Kemoterapi Günleri, İstanbul, Turkey, 6 - 08 April 2018, pp.20

2018

2018

Klinik Metagenomiğin Vaadleri ve Problemleri

GÜNDOĞDU A.

XIX. Türk Klinik Mikrobiyoloji ve İnfeksiyon Hastalıkları Kongresi, Antalya, Turkey, 28 - 31 March 2018, pp.1

2018

2018

Oral mikrobiyomdan potansiyel karaciğer kanseri biyobelirteçlerinin Keşfi

Yalçın K., GÜNDOĞDU A., NALBANTOĞLU Ö. U.

3. Yaşam Bilimleri Kongresi, Kayseri, Turkey, 24 - 25 February 2018, pp.1 Sustainable Development

2017

2017

Phage therapy: An alternative treatment option for bacterial infections caused by extensively-drug resistant pathogens

GÜNDOĞDU A.

International Conference and Expo on Clinical Virology and Infectious Diseases, Houston, United States Of America, 18 - 19 September 2017, pp.3

2017

2017

A NEW COLISTIN RESISTANCE GENE HOMOLOGOUS FOUND IN WASTEWATER METAGENOME

GÜNDOĞDU A., Önal M. G. , ULU KILIÇ A., NALBANTOĞLU Ö. U.

The 7th Congress of European Microbiologists (FEMS 2017), Valensiya, Spain, 9 - 13 July 2017, pp.1998

2017

2017

An alternative vancomycin resistant enterococci decolonization strategy: bacteriophage therapy

ULU KILIÇ A., GÜNDOĞDU A., KILIÇ H., ALP MEŞE E.

27th European Congress of Clinical Microbiology and Infectious Diseases7th European Congress of Clinical Microbiology and Infectious Diseases, 22 - 25 April 2017

2017

2017

Molecular characterization of clinical Stenotrophomonas maltophilia isolates from a tertiary care hospital in Kayseri, Turkey

PARKAN Ö. M. , KILIÇ H., GÜNDOĞDU A., ALP MEŞE E., TİMUR D., Ünaldı Ö., et al.

27th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Viyana, Austria, 22 - 25 April 2017, pp.2910

2017

2017

Rapid pathogen detection in ambiguous infections using real-time nanopore sequencing technology

GÜNDOĞDU A., KILIÇ H., ULU KILIÇ A., NALBANTOĞLU Ö. U.

27th European Congress of Clinical Microbiology and Infectious Diseases, 22 - 25 April 2017

2017

2017

Bir Süper Organizma Olarak İnsan: Mikrobiyom ve Metagenom

GÜNDOĞDU A.

TÜBA-Mikrobiyota ve İnsan Sağlığı Sempozyumu, Ankara, Turkey, 10 April 2017, pp.1

2016

2016

Plasmids with a potential of pandrug resistance coding found in human gut microbiome

GÜNDOĞDU A., NALBANTOĞLU Ö. U.

The 6th annual International Human Microbiome Consortium Congress, Houston, United States Of America, 8 - 11 November 2016, pp.36

2016

2016

Strain level pathogen detection in metagenomic samples using posterior profile corrections

NALBANTOĞLU Ö. U. , GÜNDOĞDU A.

The 6th annual International Human Microbiome Consortium Congress, Houston, United States Of America, 8 - 11 November 2016, pp.41

2016

2016

Susceptibility of ESBL-producing Escherichia coli to commercial bacteriophage coctails originated in Georgia

GÜNDOĞDU A., KILIÇ H., Bolkvadze D.

26th European Congress of Clinical Microbiology and Infectious Diseases, Amsterdam, Netherlands, 9 - 12 April 2016, pp.153

2016

2016

Sewage treatment plants cause artifical selection of ESBL-producing E. coli threatening public health

GÜNDOĞDU A., KILIÇ H., ALP MEŞE E.

26th European Congress of Clinical Microbiology and Infectious Diseases, Amsterdam, Netherlands, 9 - 12 April 2016, pp.45 Sustainable Development

2016

2016

Clonal diversity and virulence characteristics of UPEC strains with their adhesion capability on Caco-2 and A-498 cell lines

GÜNDOĞDU A., KILIÇ H., Astley D., KATOULI M.

26th European Congress of Clinical Microbiology and Infectious Diseases, Amsterdam, Netherlands, 9 - 12 April 2016, pp.192

2016

2016

Human as a source of colistin resistance: presence of the mcr-1 gene in the gut microbiome

GÜNDOĞDU A., NALBANTOĞLU Ö. U.

26th European Congress of Clinical Microbiology and Infectious Diseases, Amsterdam, Netherlands, 9 - 12 April 2016

2015

2015

Epidemiology of nosocomial Infections in Turkish Pediatric Patients: A 1-Year Retrospective Study

GÜNDOĞDU A., KILIÇ H., ULU KILIÇ A., Aydin G., ALP MEŞE E.

The 7th EURASIA CONGRESS OF INFECTIOUS DISEASES, Tiflis, Georgia, 30 September - 03 October 2015, pp.161

2017

2017

ÇOCUK VE YETISKIN HASTALARIN KAN KÜLTÜRLERINDEN IZOLE EDILEN DIRENÇLI

Şen İ., GÜNDOĞDU A., KILIÇ H.

4. Ulusal Klinik Mikrobiyoloji Kongresi, Antalya, Turkey, 08 November 2017 - 12 November 1017

Books & Book Chapters

2021

2021

Jenerik probiyotik terapinin çıkmazı ve kişiselleştirilmiş probiyotik ihtiyacı

Gündoğdu A.

in: TIP VE MÜHENDİSLİK BAKIŞ AÇISIYLA PROBİYOTİKLER VE PREBİYOTİKLER, Prof. Dr. Zeynep Dilek HEPERKAN / Prof. Dr. Zeynep Çiğdem KAYACAN, Editor, İstanbul Aydın Üniversitesi Yayınları, İstanbul, pp.107-118, 2021

2020

2020

Mikrobiyom Verisinin Biyoinformatik Analizi

Gündoğdu A., Nalbantoğlu Ö. U.

in: Microbiota, Probiotics and Rational Nutrition, Prof Dr Mustafa Altındiş, Editor, Nobel Yayın Dağıtım, Ankara, pp.93-109, 2020

2020

2020

SARS-CoV-2 İçin Tüm Genom Dizileme ve Filogenetik Analiz

GÜNDOĞDU A.

in: Mikrobiyoloji ve COVID-19, , Editor, Türkiye Klinikleri Yayınevi, pp.50-56, 2020 Sustainable Development

Supported Projects

Memberships / Tasks in Scientific Organizations

2021 - Continues

2021 - Continues

TÜRK MİKROBİYOLOJİ CEMİYETİ

Board Member

2020 - Continues

2020 - Continues

SAĞLIK BİLİMLERİ ARAŞTIRMA GRUBU

Executive Board Member

2018 - 2020

2018 - 2020

SAĞLIK BİLİMLERİ ARAŞTIRMA GRUBU

Member of Advisory Board

Awards

April 2019

April 2019

Patojenlerin hizli tespitinde gercek zamanli nanopor dizileme teknolojisinin kullanimi

7. Türkiye Ekmud Bilimsel Platformu

April 2019

April 2019

poster bildri BİRİNCİLİK ÖDÜLÜ

7. Türkiye Ekmud Bilimsel Platformu "Uluslarası Kongre"

May 2016

May 2016

Standart BAKTERİYOFAJ AKTİVİTELERİNİN ARAŞTIRILMASI SÖZLÜ SUNUM İKİNCİSİ

6.Türkiye Ekmud Kongresi

March 2016

March 2016

Atık Su ARITMA SİSTEMLERİNİN GENİŞLEMİŞ SPEKTRUMLU BETa-LAKTAMAz ÜRETEN e.coli üzerine seçici baskısı, halk sağlığı tehlikesiSustainable Development

Erciyes Üniv. Tıp Fak.

March 2016

March 2016

Komplike deri ve yumuşak doku enfeksiyonu etkeni çoklu dirençli patojenlerin bakteriyofaj duyarlılıklarının araştırılması

Erciyes Üniv. Tıp Fakültesi



Congress and Symposium Activities

01 February 2019 - 01 February 2019

01 February 2019 - 01 February 2019

7. Pediatrik Probiyotik Prebiyotik Akademisi

Invited Speaker

Antalya-Turkey

01 December 2018 - 01 December 2018

01 December 2018 - 01 December 2018

Probiyotiklerin Mühendislik ve Klinik Uygulamaları

Invited Speaker

İstanbul-Turkey

01 November 2018 - 01 November 2018

01 November 2018 - 01 November 2018

Febril Nötropeni Mezuniyet Sonrası Eğitim Kursu

Invited Speaker

Ankara-Turkey

01 November 2018 - 01 November 2018

01 November 2018 - 01 November 2018

XXXVIII TMC Kongresi

Invited Speaker

Antalya-Turkey

01 April 2018 - 01 April 2018

01 April 2018 - 01 April 2018

13. Antimikrobik Kemoterapi Günleri

Invited Speaker

İstanbul-Turkey

01 April 2018 - 01 April 2018

01 April 2018 - 01 April 2018

2nd International Human Microbiota: In health and diseases congressSustainable Development

Invited Speaker

Antalya-Turkey

01 April 2018 - 01 April 2018

01 April 2018 - 01 April 2018

2nd International Human Microbiota: In health and diseases congressSustainable Development

Invited Speaker

Antalya-Turkey

01 March 2018 - 01 March 2018

01 March 2018 - 01 March 2018

XIX. Türk Klinik Mikrobiyoloji ve İnfeksiyon Hastalıkları Kongresi

Invited Speaker

Antalya-Turkey

01 September 2017 - 01 September 2017

01 September 2017 - 01 September 2017

International Conference and Expo on Clinical Virology and Infectious DiseasesSustainable Development

Invited Speaker

Texas-United States Of America

01 April 2017 - 01 April 2017

01 April 2017 - 01 April 2017

TÜBA-Mikrobiyota ve İnsan Sağlığı Sempozyumu

Invited Speaker

Ankara-Turkey

01 December 2016 - 01 December 2016

01 December 2016 - 01 December 2016

Ulusal İnsan Mikrobiyotası ve Sağlığımıza Etkileri Kongresi

Invited Speaker

Ankara-Turkey

Citations

Total Citations (WOS): 303

h-index (WOS): 10