Publications & Works

Published journal articles indexed by SCI, SSCI, and AHCI

COVID-19 Pandemic: Group Testing

FRONTIERS IN MEDICINE, vol.7, 2020 (Peer-Reviewed Journal) Sustainable Development identifier identifier identifier

Articles Published in Other Journals

Refereed Congress / Symposium Publications in Proceedings

Machine Learning Analysis of Inflammatory Bowel Disease-Associated Metagenomics Dataset

2018 3rd International Conference on Computer Science and Engineering (UBMK), 20 - 23 September 2018

Potential microbial biomarkers of lung cancer

28th European Congress of Clinical Microbiology and Infectious Diseases, 21 - 24 April 2018 Sustainable Development

Potential microbial biomarkers of lung cancer .

28th European Congress of Clinical Microbiology and Infectious Diseases, Madrid, Spain, 21 - 24 April 2018 Sustainable Development

Persistence of Microbial Communities in the Hospital Environment

2nd International Human Microbiota: In health and diseases congress, Antalya, Turkey, 18 - 22 April 2018, pp.44

Towards Microbiome-Based Liquid Biopsy: Oral Microbiota Harbors Highly Accurate Biomarkers of Lung Cancer

2nd International Human Microbiota: In health and diseases congress, Antalya, Turkey, 18 - 22 April 2018, pp.60-61 Sustainable Development

Should Bacterial Etiologies Be Considered in Aseptic Loosening?

2nd International Human Microbiota: In health and diseases congress, Antalya, Turkey, 18 - 22 April 2018, pp.71

Accurate Classification and Biomarker Discovery in Disease Microbiome Using a Novel De Novo Bioinformatics Approach

2nd International Human Microbiota: In health and diseases congress, Antalya, Turkey, 18 - 22 April 2018, pp.63

Microbiome Network Analysis Reveals Highly Symbiotic Interaction of Core Metabolic Pathways

2nd International Human Microbiota: In health and diseases congress, Antalya, Turkey, 18 - 22 April 2018, pp.95

Whole-genome sequencing reveals recently acquired virulence islands in Ralstonia mannitolilytica isolated from high-risk patients

28th European Congress of Clinical Microbiology and Infectious Diseases8th European Congress of Clinical Microbiology and Infectious Diseases, Madrid, Spain, 21 April 2018, pp.1765

Comparison of antimicrobial resistance-gene diversity in gut microbiome of healthy individuals from Turkey, Europe, America and China

28th European Congress of Clinical Microbiology and Infectious Diseases8th European Congress of Clinical Microbiology and Infectious Diseases, Madrid, Spain, 21 April 2018, pp.1512

A phylogeny-free microbiome dysbiosis detection pipeline for non-invasive disease diagnosis

IEEE International Conference on Electro Information Technology (eit2017), 14 May 2016 - 17 May 2017

Hyperthermia and Plasma Membrane Ca ATPase: Isthere any effect of HT on PMCA?

1. Uluslararası Kanser veİyon Kanalları Kongresi (IONCC2017), 21 - 23 September 2017

A NEW COLISTIN RESISTANCE GENE HOMOLOGOUS FOUND IN WASTEWATER METAGENOME

The 7th Congress of European Microbiologists (FEMS 2017), Valensiya, Spain, 9 - 13 July 2017, pp.1998

Inferring pathogen transmission networks in Intensive Care Units

IEEE International Conference on Electro Information Technology (eit2017), 14 January - 17 May 2017

Strain level pathogen detection in metagenomic samples using posterior profile corrections

The 6th annual International Human Microbiome Consortium Congress, Houston, United States Of America, 8 - 11 November 2016, pp.41

Rare Members of the Microbiome as Contributors to Dysbiosis

THE 6TH INTERNATIONAL HUMAN MICROBIOME CONSORTIUM CONGRESS, 8 - 11 November 2016

Plasmids with a potential of pandrug resistance coding found in human gut microbiome

The 6th annual International Human Microbiome Consortium Congress, Houston, United States Of America, 8 - 11 November 2016, pp.36

Human as a source of colistin resistance: presence of the mcr-1 gene in the gut microbiome

26th European Congress of Clinical Microbiology and Infectious Diseases, Amsterdam, Netherlands, 9 - 12 April 2016

Characterization of Protein Sequences Using Latent Semantic Analysis

9th International Symposium on Health Informatics and Bioinformatics HIBIT 2015, 16 - 17 October 2015

Compression of Next Generation Sequencing Data

2015 Data Compression Conference, Snowbird, UT, USA, 7 - 09 April 2015

Compression of Quality Factors in Next Generation Sequencing

2014 Data Compression Conference, Snowbird, UT, USA, 26 - 28 March 2014

Books & Book Chapters

Mikrobiyota, Probiyotikler ve Akılcı Beslenme

in: Mikrobiyota, Probiyotikler ve Akılcı Beslenme, Mikrobiyota, Probiyotikler ve Akılcı Beslenme, Editor, Nobel Akademik Yayıncılık, pp.93-190, 2020

Data Compression

in: Computing Handbook, Third Edition: Computer Science and Software Engineering, Teofilo Gonzales, Jorge Diaz-Herrera, Allen Tucker, Editor, Chapman And Hall/Crc, Boca Raton, pp.48-1, 2014

Dynamic programming

in: Multiple Sequence Alignment Methods, David J. Russell, Editor, Springer, London/Berlin , New York, pp.3-27, 2013