Beyond the phenotype: Exploring inherited retinal diseases with targeted next-generation sequencing in a Turkish cohort

ÖZGÜÇ ÇALIŞKAN B., USLU K., Kahraman N. S., ERKILIÇ K., Oner A., DÜNDAR M.

CLINICAL GENETICS, cilt.106, sa.3, ss.258-266, 2024 (SCI-Expanded) identifier identifier identifier

  • Yayın Türü: Makale / Tam Makale
  • Cilt numarası: 106 Sayı: 3
  • Basım Tarihi: 2024
  • Doi Numarası: 10.1111/cge.14529
  • Dergi Adı: CLINICAL GENETICS
  • Derginin Tarandığı İndeksler: Science Citation Index Expanded (SCI-EXPANDED), Scopus, Academic Search Premier, BIOSIS, CAB Abstracts, EMBASE
  • Sayfa Sayıları: ss.258-266
  • Anahtar Kelimeler: genetic diagnosis, inherited retinal disease, retinitis pigmentosa, targeted next-generation sequencing, vision loss
  • Erciyes Üniversitesi Adresli: Evet

Özet

This research aims to compile recent clinical and genetic data from Turkish patients with inherited retinal disorders and evaluate the effectiveness of targeted Next-generation sequencing panels. The study included Turkish individuals with hereditary retinal diseases who visited the Medical Genetic Department of Erciyes University between 2019 and 2022. One proband per family was selected based on eligibility. We used Hereditary Disorder Solution (HDS) by Sophia Genetics and performed next-generation sequencing (NGS) with Illumina NextSeq-500. Bioinformatics analysis using Sophia DDM (R) SaaS algorithms and ACMG guidelines classified genomic changes. The study involved 354 probands. Disease-causing variants were found in 58.1% of patients, with ABCA4, USH2A, RDH12, and EYS being the most frequently implicated genes. Forty-eight novel variants were detected. This study enhances the knowledge of clinical diagnoses, symptom onset, inheritance patterns, and genetic details for Turkish individuals with hereditary retinal disease. It contributes to broader health strategies by enabling comparisons with other studies. The objective of this study is to clarify the genetic foundation of hereditary retinal diseases in a Turkish population by gathering data from 354 probands. Using the panel-based NGS method, 103 genes were assessed, resulting in a diagnostic success rate of 58.1%. image